2024
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M. Stofella, A. Grimaldi, J.H. Smit, J. Claesen, E. Paci, F. Sobott; Computational Tools for Hydrogen–Deuterium Exchange Mass Spectrometry Data Analysis; Chem. Rev.
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2022
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D. Smets, A. Tsirigotaki, J.H. Smit, S. Krishnamurthy, A.G. Portaliou, A. Vorobieva, W. Vranken, S. Karamanou, A. Economou; Evolutionary adaptation of the protein folding pathway for secretability; The EMBO Journal
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L. Zhang, M. Isselstein, J. Köhler, N. Eleftheriadis, N.M. Huisjes, M. Guirao-Ortiz, A. Narducci, J.H. Smit, J. Stoffels, H. Harz, H. Leonhardt, A. Herrmann, T. Cordes; Linker Molecules Convert Commercial Fluorophores into Tailored Functional Probes during Biolabelling; Angewandte Chemie International Edition
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D. Smets, J.H. Smit, Y. Xu, S. Karamanou, A. Economou; Signal Peptide-rheostat Dynamics Delay Secretory Preprotein Folding; Journal of Molecular Biology
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S. Krishnamurthy, M. Sardis, N. Eleftheriadis, K.E. Chatzi, J.H. Smit, K. Karathanou, G. Gouridis, A.G. Portaliou, A. Bondar, S. Karamanou, A. Economou; Preproteins couple the intrinsic dynamics of SecA to its ATPase cycle to translocate via a catch and release mechanism; Cell Reports
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2021
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B. Yuan, A.G. Portaliou, R. Parakra, J.H. Smit, J. Wald, Y. Li, B. Srinivasu, M.S. Loos, H.S. Dhupar, D. Fahrenkamp, C.G. Kalodimos, F. Duong van Hoa, T. Cordes, S. Karamanou, T.C. Marlovits, A. Economou; Structural Dynamics of the Functional Nonameric Type III Translocase Export Gate; Journal of Molecular Biology
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J.H. Smit, G. Roussel, A. Economou; Dynamics ante portas; PNAS
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S. Krishnamurthy, N. Eleftheriadis, K. Karathanou, J.H. Smit, A.G. Portaliou, K.E. Chatzi, S. Karamanou, A. Bondar, G. Gouridis, A. Economou; A nexus of intrinsic dynamics underlies translocase priming; Structure
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J.H. Smit, S. Krishnamurthy, B.Y. Srinivasu, R. Parakra, S. Karamanou, A. Economou; Probing Universal Protein Dynamics Using Hydrogen–Deuterium Exchange Mass Spectrometry-Derived Residue-Level Gibbs Free Energy; Anal. Chem.
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2019
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J.H. Smit, J.H.M. Velde, J. Huang, V. Trauschke, S. S. Henrikus, S. Chen, N. Eleftheriadis, E. M. Warszawik, A. Herrmann, T. Cordes; On the impact of competing intra- and intermolecular triplet-state quenching on photobleaching and photoswitching kinetics of organic fluorophores; Physical Chemistry Chemical Physics
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J.H. Smit, Y. Li, E.M. Warszawik, A. Herrmann, T. Cordes; ColiCoords: A Python package for the analysis of bacterial fluorescence microscopy data; PLOS ONE
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2018
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J.H.M. Velde, J.H. Smit, E. Hebisch, M. Punter, T. Cordes; Self-healing dyes for super-resolution fluorescence microscopy; J. Phys. D: Appl. Phys.
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2017
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J. Kim, J.H. Smit, D.K. Prusty, A.J. Musser, N. Tombros, P.C.W. Lee, A. Herrmann, M. Kwak; Ultrasensitive Detection of Oligonucleotides: Single-Walled Carbon Nanotube Transistor Assembled by DNA Block Copolymer; Journal of Nanoscience and Nanotechnology
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2016
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J.H.M. van der Velde, J. Oelerich, J. Huang, J.H. Smit, A. Aminian Jazi, S. Galiani, K. Kolmakov, G. Gouridis, C. Eggeling, A. Herrmann, G. Roelfes, T. Cordes; A simple and versatile design concept for fluorophore derivatives with intramolecular photostabilization; Nature Communications
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2014
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J.H.M. van der Velde, J. Oelerich, J. Huang, J.H. Smit, M. Hiermaier, E. Ploetz, A. Herrmann, G. Roelfes, T. Cordes; The Power of Two: Covalent Coupling of Photostabilizers for Fluorescence Applications; J Phys Chem Lett
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